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Welcome to UTRminer |
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UTRminer is a CMS annotating frequent sequencial patterns (FSPs) of RNA regulatory motifs in the untranslated regions (UTRs) of mRNA in Metazoa.
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AIM
The aim is the extraction of implicit knowledge (relations) among UTRs sequences and UTRs regulatory motifs not explicitly reported in related databases, using data mining techniques.
The idea is that of mining frequent combinations of translation regulatory motifs since their significant co-occurrences could reveal functional relationships important for the post-transcriptional control of genome expression.
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UTRminer Resources
The UTRminer database integrates data of MitoRes database with:
- UTR sequences collected from the UTRef database;
- UTR regulatory motifs extracted from the UTRsite database, including standard name, description and pattern annotation syntax;
- Data on species, gene name, protein function;
- UTR sequence length, base composition and UTRef ID reference;
- Gene Ontology (GO) and PFam IDs.
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Read more...
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